Stanford’s Mike Snyder is Showing the Way With Personalized Medicine

11/19/12Follow @xconomy

Say the words “personalized medicine” to people from various walks of life, and you’re likely to get one of about four different reactions.

A. “Personalized medicine? What’s that?” (Usually spoken by 99 percent of patients.)

B. “Personalized medicine will bankrupt the country with expensive new diagnostic tests, and overrated targeted drugs.” (Usually spoken by health economists.)

C. “Personalized medicine is overhyped, a load of bunk.” (Usually spoken by grizzled pharma industry vets who remember the genomics crash of a decade ago, and have a financial interest in preserving the status quo.)

D. “Personalized medicine will revolutionize healthcare, moving us away from reactive sick-care and more toward predictive and preventive strategies focused on wellness.” (Usually spoken by the subset of true believers in science and the biotech industry.)

You can make arguments, buttressed with data, to support any of the last three positions. But none of these positions quite captures the truth. We are in the early days of the personalized medicine movement, and don’t know how the story will unfold. As a journalist who’s followed many different threads of this story for the last decade, I keep getting the feeling that we’re moving further away from one-size-fits-all medicine, and more toward treatment based on extremely detailed molecular readouts on your state of health or disease. People may have snickered at Internet pioneer Larry Smarr and his friends in the “Quantified Self” movement for being weird a couple years ago, but I can easily envision people jumping on this bandwagon sometime not too far out.

I was fascinated this past week when I had a chance to talk with Mike Snyder, a geneticist who has turned himself into a poster child for personalized medicine through his work at Stanford University. After talking with him for about a half hour last week, I hung up thinking his experience today could seem mainstream in another 10 or 20 years.

Stanford geneticist Mike Snyder

Snyder, for those who are unfamiliar, was the guy at the center of an important paper published in the journal Cell back in March. This paper described how researchers sequenced Snyder’s genome, and then really got rolling in their quest to understand his biochemical state of being at 20 different snapshots in time over a 14-month period. The scientists took blood samples from him when he was feeling fine, and a few times when he was sick with viral infections. They then ran the samples through instruments that captured an extremely detailed look at 40,000 molecular parameters in his blood. These were metabolites, proteins, RNA transcripts, self-directed antibodies. This hard-core genomic, transcriptomic, metabolomic and proteomic approach (which the scientists called an integrative personal ‘omics profile) could have been just a demonstration of technological overkill, offering very little information that could lead anyone to make better decisions about their health.

But that’s not what happened. It turned out that the results, surprisingly, showed this healthy white guy in his mid-50s was at high risk of getting Type 2 diabetes—which if it’s not controlled, it can lead down the path to blindness, amputations, stroke, or heart attack.

At the time the molecular analysis revealed this trend, it was hard to believe. Snyder had no family history of the disease, and most everybody in his family is thin. His genome said he was at low risk of obesity, and at a shade under 5-foot-10, and 160 pounds, Snyder’s general practitioner thought the idea of him becoming diabetic was far-fetched.

But just as the pan-‘omics tests had predicted, researchers saw over time that something was amiss with Snyder’s ability to control his blood sugar—especially, and oddly, when he had viral infections. When looking at two traditional blood measurements of diabetes—blood sugar concentration levels and hemoglobin A1C counts—both of those numbers progressively climbed into worrisome territory. As the sweeping ‘omics-driven analysis had predicted, Snyder was diagnosed with diabetes.

He remembers the day that word came, April 11, 2011. He decided it was time to change his health habits.

“Up until that point, I had been eating lots of sweets. I’d have ice cream all the time after dinner. It really was a pretty bad diet,” Snyder says. After the diagnosis, it took him six months to get his blood sugar levels back to normal. “I completely cut out all dessert, and have had one bite of wedding cake since,” he says. That one exception came when one of his postdocs got married, he says.

That might be how anybody in this situation would react to a diabetes diagnosis, with enough self-discipline. But what makes this story even more interesting is that when Snyder changed his diet, and ramped up his daily exercise routines, he could see how his biochemical profile changed when his behavior changed. The scientists have kept looking at measurements of 40,000 different molecules in Snyder’s blood, before, during, and after his diagnosis. Suddenly, you can see not only that bicycling 40-50 miles a week instead of 20-30 miles has helped him lose 15 pounds. You can also see the molecular warning signs of diabetes have returned roughly to normal, along with his blood sugar and hemoglobin A1c scores.

“This study is a landmark for personalized medicine,” Eric Topol, a professor of genomics at the Scripps Research Institute in San Diego, told the New York Times.

Months later, Snyder reports that even though he’s not technically cured of diabetes, he’s been able … Next Page »

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